De novo transcriptome assembly of mangosteen ( Garcinia mangostana L.) fruit
نویسندگان
چکیده
منابع مشابه
De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit
Garcinia mangostana L. (Mangosteen), of the family Clusiaceae, is one of the economically important tropical fruits in Indonesia. In the present study, we performed de novo transcriptomic analysis of Garcinia mangostana L. through RNA-Seq technology. We obtained the raw data from 12 libraries through Ion Proton System. Clean reads of 191,735,809 were obtained from 307,634,890 raw reads. The raw...
متن کاملRNA-seq analysis of mangosteen (Garcinia mangostana L.) fruit ripening
Mangosteen (Garcinia mangostana L.) is known for its delectable taste and contains high amount of xanthones which have been reported to possess anti-cancer, anti-inflammatory and other bioactive properties. However, stage-specific regulation of mangosteen fruit ripening has never been studied in detail. We have performed a comparative transcriptomic analysis of three ripening stages (Stage 0, 2...
متن کاملClustering of Short Read Sequences for de novo Transcriptome Assembly
Given the importance of transcriptome analysis in various biological studies and considering thevast amount of whole transcriptome sequencing data, it seems necessary to develop analgorithm to assemble transcriptome data. In this study we propose an algorithm fortranscriptome assembly in the absence of a reference genome. First, the contiguous sequencesare generated using de Bruijn graph with d...
متن کاملPolyphenols from the mangosteen (Garcinia mangostana) fruit for breast and prostate cancer
The mangosteen (Garcinia mangostana) is a tropical fruit native to Southeast Asia and has long been reported to contain multiple health promoting properties. This fruit is an abundant source of xanthones, a class of polyphenolic compounds with a distinctive tricyclic aromatic ring system and is largely responsible for its biological activities including anti-cancer activity. Herein we describe ...
متن کاملDe novo sequencing and assembly of Azadirachta indica fruit transcriptome
Neeraja M. Krishnan, Swetansu Pattnaik, S. A. Deepak, Arun K. Hariharan, Prakhar Gaur, Rakshit Chaudhary, Prachi Jain, Srividya Vaidyanathan, P. G. Bharath Krishna and Binay Panda* Ganit Labs, Bio-IT Centre, Institute of Bioinformatics and Applied Biotechnology, Biotech Park, Electronic City Phase I, Bangalore 560 100, India Strand Life Sciences, Kirloskar Business Park, Bellary Road, Hebbal, B...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Genomics Data
سال: 2016
ISSN: 2213-5960
DOI: 10.1016/j.gdata.2016.09.003